Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs17087082 | chr5:96199288 | G/T | 2.99E-6 | 490 | 15.2 | 16.9 | 20.83 | KM Plot |
| THCA | rs17087085 | chr5:96200746 | T/C | 3.25E-6 | 488 | 15.2 | 16.9 | 20.83 | KM Plot |
| THCA | rs17087092 | chr5:96202277 | C/G | 3.31E-6 | 487 | 15.17 | 16.9 | 20.83 | KM Plot |
| THCA | rs17087112 | chr5:96207782 | A/T | 3.31E-6 | 487 | 15.17 | 16.9 | 20.83 | KM Plot |
| THCA | rs17087114 | chr5:96211730 | G/C | 5.03E-10 | 484 | 15.17 | 20.8 | 20.6 | KM Plot |
| THCA | rs17087117 | chr5:96212113 | T/C | 4.9E-10 | 485 | 15.17 | 20.43 | 20.6 | KM Plot |
| THCA | rs17087122 | chr5:96213470 | A/G | 5.03E-10 | 484 | 15.17 | 20.43 | 20.6 | KM Plot |
| THCA | rs17091027 | chr8:19576463 | C/T | 2.37E-12 | 474 | 15.9 | 15 | 10.03 | KM Plot |
| THCA | rs17093312 | chr14:59715923 | G/T | 1.54E-8 | 487 | 16.3 | 14.1 | 5.45 | KM Plot |
| THCA | rs17093314 | chr14:59738186 | G/A | 2.62E-7 | 489 | 16.38 | 13.5 | 5.45 | KM Plot |
| THCA | rs17095181 | chr1:74825877 | C/T | 5.52E-9 | 490 | 15.3 | 15 | 16.02 | KM Plot |
| THCA | rs17095915 | chr14:59704841 | G/C | 2.57E-8 | 486 | 16.07 | 14.9 | 5.1 | KM Plot |
| THCA | rs17095918 | chr14:59707006 | C/T | 2.57E-8 | 486 | 16.07 | 14.9 | 5.1 | KM Plot |
| THCA | rs17095928 | chr14:59708431 | G/C | 2.57E-8 | 486 | 16.07 | 14.9 | 5.1 | KM Plot |
| THCA | rs17095939 | chr14:59716240 | C/G | 1.54E-8 | 487 | 16.3 | 14.1 | 5.45 | KM Plot |